Episodes
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Episode 45 - Surviving freezing through leg amputation. But be careful about regeneration!
This week we discussed how flies survive in freezing temperatures with Anne Sustar, a Research Scientist / Lab Manager, Dominic Golding, a medical student, and John Tuthill (@casa_tuthill), Associate professor at the University of Washington, Seattle.
Read the full preprint -> Adult Drosophila legs do not regenerate after amputation https://www.biorxiv.org/content/10.1101/2022.10.25.513553v1
Article: Snow flies self-amputate freezing limbs to sustain behavior at sub-zero temperatures
https://www.sciencedirect.com/science/article/pii/S0960982223012150?via%3Dihub
This episode was produced by Sonia Gomes Pereira and Johny Coates and edited by Sonia Gomes Pereira.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Camila (@Kamo_Valenzuela) & Sonia (@SniaGPereira1). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we celebrate the end of the year by chatting with our host Jonny Coates (@JACoates), Associate Director at ASAPBio. Join us for a conversation on the importance of all things preprints, science communication, open access, career development, and community building, plus his decision to leave academia and how this podcast started!
If you stay until the end, you might have a glimpse of how it is to record an episode with pets.
Jonny Coates (https://jacoates.co.uk/)
Preprints in Motion (https://preprintsinmotion.wordpress.com/)
ASAPbio (https://asapbio.org)
This episode was produced and edited by Camilla Valenzuela.
If you enjoyed this show, then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; https://preprintsinmotion.wordpress.com/.
Find us on Twitter: Jonny (@JACoates) & Camila (@Kamo_Valenzuela). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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Episodes manquant?
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It's open access week 2023 and to celebrate we focus on preprint peer review with Review Commons. We talk to Sara Monaco (@monaco_reviewcommons; Managing Editor) and Thomas Lemberger (@tlemberger; Deputy Head of Scientific Publications at EMBO and Project Leader for Review Commons).
This episode was produced by Sónia Gomes Pereira and edited by Sónia Gomes Pereira.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Camila (@Kamo_Valenzuela) & Sonia (@SniaGPereira1). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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To celebrate the end of Peer Review Week (2023) we recorded a live episode of the podcast with Stefano Bertozzi from Rapid Reviews to talk all things preprint peer review. No editing on this one!
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This week we discuss the academic career of a young PI with Charlotte Odendall @codendall, a Sir Henry Dale Fellow at King’s College London. Join us for a conversation on starting a group with a Fellowship, how martial arts help with stress, and why we all need a friend who tells us “just do it”.
Charlotte Odendall: https://www.kcl.ac.uk/research/odendall-group
This episode was hosted, produced, and edited by Dr. Camila Valenzuela.
If you enjoyed this show, then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; https://preprintsinmotion.wordpress.com/.
Find us on Twitter: Jonny (@JACoates), Camila (@Kamo_Valenzuela) & Sonia (@SniaGPereira1) Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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It’s our 2 year birthday this month! To celebrate we take a trip back to the past and discuss the history of preprint servers with Matthew Cobb, a Professor at the University of Manchester.
Find Matthew’s BBC podcast for more about the great science publishing scandal https://www.bbc.co.uk/programmes/m0004l7k
If you want to learn more about the prehistory of preprint servers you can read the full article here https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2003995
This episode was produced by Jonny Coates and edited by Camila Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Camila (@Kamo_Valenzuela) & Sonia (@SniaGPereira1). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss all things ECR with Mayank Chugh & Gracielle Higino, two current postdocs who are leading the efforts in fighting for a better environment for ECRs in academia.
Gracielle is an ASAPbio fellow and program co-ordinator at BIOS2, a community of researchers who are exploring and applying modern-day computational and quantitative techniques to address the challenges of biodiversity sciences. You can find her on Twitter @GracielleHigino and online https://www.graciellehigino.com/. Learn more about BIOS2 - https://bios2.usherbrooke.ca/.
Mayank is the President of the Harvard Medical Postdoc Association (HMPA). He also leads a DEIB working group in the department of systems biology towards fair recruitment of postdocs and faculty. He is an advocate for mental health awareness, equity, and a plethora of much needed changes in the current academic system - many listeners will already be familiar with his various writings and contributions to articles written by journalists. Mayank is also a poet and can be found on Twitter @mayank_mchugh and online https://www.mayankchugh.org/.
Implicit bias test https://implicit.harvard.edu/implicit/takeatest.html or learn more https://implicit.harvard.edu/implicit/user/jaxt/blogposts/piblogpost021.html
This episode was produced by Jonny Coates and edited by Sónia Gomes Pereira.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Camila (@Kamo_Valenzuela) & Sonia (@SniaGPereira1). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss the academic career of a young PI with Thibaut Brunet @thibaut_brunet, a G5 Group Leader at Institut Pasteur. Join us for a conversation on eating spiders, dancing creatures of the ocean, and the challenges of applying for and starting a group in the middle of the COVID-19 pandemic.
Thibaut Brunet: https://research.pasteur.fr/en/team/evolutionary-cell-biology-and-evolution-of-morphogenesis/
This episode was hosted, produced, and edited by Dr. Camila Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee at https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; https://preprintsinmotion.wordpress.com/
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Find us on Twitter: Jonny (@JACoates) & Camila (@Kamo_Valenzuela). Generously supported by ASAPbio (https://asapbio.org | @asapbio_). -
This week we discuss hot and cold fibrosis with Shoval Miyara, a PhD student at the Weizmann Institute of Science.
Find shoval on Twitter (https://twitter.com/MiyaraShoval)
Read the full preprint -> https://www.biorxiv.org/content/10.1101/2023.01.01.522422v1
This episode was produced by Jonny Coates and edited by Camila Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) & Camila (@Kamo_Valenzuela). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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In the PI’s seat - Nicolás Rascovan
This week we discuss the academic career of a young PI with Nicolás Rascovan @NRascovan, a G5 Group Leader at Institut Pasteur.
Nicolás Rascovan: https://research.pasteur.fr/en/team/microbial-paleogenomics/
https://nicorascovan.wordpress.com/
This episode was hosted, produced, and edited by Dr. Camila Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) & Camila (@Kamo_Valenzuela). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss synthetic carbon fixation, running a lab as a postdoc and eLife’s new publishing model with Sebastian Wenk, a Postdoc at the Max Planck Institute of Molecular Plant Physiology.
Read the full preprint -> https://www.biorxiv.org/content/10.1101/2022.09.28.509898v1.full
Sebastian -> https://www.mpimp-golm.mpg.de/person/50878/2132817
Arren Bar-Evan -> https://arren-bar-even.muchloved.com/
This episode was produced and edited by Jonny Coates.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8 & Camila (@Kamo_Valenzuela) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss the big changes occurring over at eLife with Editor in Chief Mike Eisen & original ECAG member Devang Mehta. From Jan 2023, eLife is focusing on public reviews and assessments of preprints and eliminating accept/reject decisions after peer review. Read more about this new model here: https://elifesciences.org/inside-elife/54d63486/elife-s-new-model-changing-the-way-you-share-your-research
Mike Eisen: http://mcb.berkeley.edu/faculty/GEN/eisenm.html
Devang Mehta: https://mehta-lab.com/
eLife: https://elifesciences.org/
This episode was produced by Jonny Coates and edited by Camilla Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) & Camila (@Kamo_Valenzuela). Generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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DISCLAIMER – These servers were reviewed from the approach of a first use instance and may not accurately reflect the full capabilities of each server. Moreover, any comments are opinions only.
Preprint servers. There’s an incredibly interesting history behind them (watch this space for more on that next year) but as of 2022 there are over 50 different preprint servers. No wonder it feels like they’re an inescapable topic these days. I mean, we’re contributing to that but hey. Some are highly specialised, such as EcoEvoRxiv (that’s ecology, evolution and conservation), and some are geo-restricted, such as AfriaRxiv.
Consideration of preprint servers based on discipline, scope, policies, and readership is relevant to inform where to deposit your preprint, and in turn to maximize visibility for the work and opportunities for feedback from researchers in your specific field. In this episode we take 3 of the top general bioscience preprint severs and put them to battle. We judge each on their:
Appearance / ease of use – navigating and submitting Reach /size Journal integrations Additional offerings – public peer reviews, data, printing, links out, attention/metrics Positives of the server Negatives/improvement aspects of the server Why choose this server over the others?Useful links:
https://asapbio.org/preprint-servers
https://journals.biologists.com/bio/article/11/7/bio059310/276073/A-guide-to-preprinting-for-early-career
Some preprint servers in addition to those discussed in the episode:
OSF – more of a search engine but very useful
bioRxiv/medRxiv
Research Square
Authorea
F1000
Cell Sneak Peak and Preprints with the Lancet
Preprints.org
This episode was produced by Jonny Coates, Camilla Valenzuela and John Howard and edited by John Howard.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss RNA editing in cephalopods with postdoc Kavita Rangan.
Read the full preprint -> https://www.biorxiv.org/content/10.1101/2022.09.25.509396v1.full
This episode was produced by Jonny Coates and edited by Tala Noun & John Howard.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we chat with Daniela Saderi, she is the Co-Founder and Director of PREreview (@prereview_), an open project with the mission to bring more equity and transparency to the evaluation of research content, giving systematically excluded researchers better ways to find, train, and contribute to peer review. In her role, she is responsible for partnership and community building, fundraising, and supervising the development of open infrastructure and programs.
Other links:
https://info.africarxiv.org/https://zenodo.org/record/6773615#.Yzn4alLMI-Q
https://twitter.com/prereview_
https://elifesciences.org/labs/57d6b284/prereview-a-new-resource-for-the-collaborative-review-of-preprints
https://onlinelibrary.wiley.com/doi/abs/10.1002/leap.1472
This episode was produced & edited by Jonny Coates.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod, Instagram @Motion_Pod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss modeling cell-cell collisions with Pedrom Zadeh, a 4th year PhD student at Johns Hopkins University. We learn how to distill basic biology into models and just how important and useful modeling can be as a tool.
Read the full preprint -> https://www.biorxiv.org/content/10.1101/2022.05.13.491710v1.full
Twitter thread on the preprint -> https://twitter.com/diffusiveblob/status/1526247248241246208?s=20&t=DGdP1wWJYW6wVsBFCeQp1w
Other links:
3 blue 1 brown: https://www.youtube.com/c/3blue1brownAtomic Habbits: https://www.amazon.co.uk/Atomic-Habits-Proven-Build-Break/dp/B07J1XQSNK/ref=sr_1_1?adgrpid=130289978361&gclid=Cj0KCQjwj7CZBhDHARIsAPPWv3flGGVJehb4MWwgynAUZMCcrmn0OUt1J3RahhuXQ-y8HHwUb2ULqPMaArOKEALw_wcB&hvadid=542921826939&hvdev=c&hvlocphy=9050361&hvnetw=g&hvqmt=e&hvrand=1668537604868110719&hvtargid=kwd-1463848202564&hydadcr=24400_1816039&keywords=atomic+habits&qid=1663873098&s=books&sr=1-1
This episode was produced by Emma Wilson & Jonny Coates and edited by Camila Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss how cells can divide without nuclei and why this happens with Anand Bakshi, Fabio Echegaray Iturra (@fabioechegaray) & Mustafa G. Aydogan @AydoganLab. We also highlight Drosophila as an amazing model system that just keeps on giving and speak about the importance of preprints in collaboration and grant applications. We also discuss the limitations of preprints and the fluidity of science.
Read the full preprint: https://www.biorxiv.org/content/10.1101/2022.06.15.496343v1.full
Other links:
https://www.theguardian.com/science/2017/oct/07/fruit-fly-fascination-nobel-prizes-genetics
https://aydoganlab.com/
This episode was produced by Emma Wilson and edited by Jonny Coates.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss mitochondrial DNA and its importance in aging with Amy Vandiver (@AmyVandiver2). We also highlight a new method to quickly sequence full length mitochondrial DNA allowing for mitochondrial genome comparisons and the understanding of the diversity between mitochondrial DNA. As usual we also discuss the process of pre-printing, preLights and how they can generate collaborations. As well as understanding more about the MD PhD group leader route.
Read the full preprint: https://www.biorxiv.org/content/10.1101/2022.02.23.480720v2.full
This episode was produced by Emma Wilson and edited by Jonny Coates.
Use the code “jonny” to get free access to an online course all about preprints: https://courses.karger.com/courses/take/how-to-decide-on-preprints-and-open-access-licence/texts/28775362-introduction
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_). Any additional sound effects used are from https://www.zapsplat.com.
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This week we discuss a different take on sharing scientific findings with Alex Freeman (@alex_freeman), creator of Octopus @science_octopus. Octopus is resetting the incentive structure for research sharing, putting the emphasis on assessing the quality of what people are doing within the lab.
Find out more here https://www.jisc.ac.uk/rd/projects/octopus-creating-a-new-primary-research-record-for-science
Use the code “jonny” to get free access to an online course all about preprints: https://courses.karger.com/courses/take/how-to-decide-on-preprints-and-open-access-licence/texts/28775362-introduction
This episode was produced by Jonny Coates and edited by Camila Valenzuela.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_).
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This week we discuss macrophage heterogeneity with Graham Heieis (@GrahamHeieis), a Post-doc at the Leiden University Medical Center (@LUMC_Leiden) in the Netherlands. We speak to him about mass cytometry and spectral flow cytometry and their use to investigate heterogeneity of tissue specific macrophages with regards to metabolism. We then have our usual chat about preprints, moving labs from Canada to Scotland as well as a bit of a a whiskey discussion.
Read the full preprint: https://www.biorxiv.org/content/10.1101/2022.05.26.493548v1.full
This episode was produced by Emma Wilson and edited by John D Howard.
If you enjoyed this show then hit that subscribe button and leave a review (on Apple Podcasts or Spotify). If you love what we are trying to do then buy us a coffee https://www.buymeacoffee.com/preprints! Any contribution is greatly appreciated.
For the latest podcast news and updates follow us on Twitter @MotionPod or visit our website; www.preprintsinmotion.com.
Produced by JEmJ Productions (find us on Twitter: Jonny @JACoates, Emma @ELWilson92, John @JohnDHoward8) and generously supported by ASAPbio (https://asapbio.org | @asapbio_). Any additional sound effects used are from https://www.zapsplat.com.
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